Hi Guys,
Can you please help with an error message arised from
BiocGenerics:::testPackage for the package IFAA?
The BioConductor platform produced the following error message when
running BiocGenerics:::testPackage("IFAA"):
"
BiocGenerics:::testPackage("IFAA")
Error in BiocGenerics:::testPackage("IFAA") :
unable to find unit tests, no subdir 'unitTests'
Execution halted
"
The error is very strange because the subdirectory "unitTests" is
there in the folder "inst". And we have previously passed the test of
the package thru the github webpage
(https://github.com/Bioconductor/Contributions/issues/2651). We have
also tested "BiocGenerics:::testPackage("IFAA")" on our own computer
and it did not have this error.
Thanks,
Zhigang
https://sites.google.com/view/zlab
On Mon, Nov 14, 2022 at 7:22 AM Kern, Lori
<lori.sheph...@roswellpark.org> wrote:
>
> There is a devel landing page and the source tar is available:
>
> https://bioconductor.org/packages/microSTASIS.html
>
>
> IFAA also has a landing page but not available as it is failing on the daily
> builder across all platforms:
> https://bioconductor.org/packages/IFAA.html
>
> Cheers
>
>
> Lori Shepherd - Kern
>
> Bioconductor Core Team
>
> Roswell Park Comprehensive Cancer Center
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
>
> ________________________________
> From: Kurt Hornik <kurt.hor...@wu.ac.at>
> Sent: Friday, November 11, 2022 6:51 AM
> To: kurt.hor...@wu.ac.at <kurt.hor...@wu.ac.at>
> Cc: Kern, Lori <lori.sheph...@roswellpark.org>; c...@r-project.org
> <c...@r-project.org>; Pedro Sánchez Sánchez <bio.pedro.technol...@gmail.com>;
> lzg2...@gmail.com <lzg2...@gmail.com>
> Subject: Re: Archive CRAN packages now accepted on Bioconductor
>
> >>>>> Kurt Hornik writes:
>
> Lori,
>
> I now see
>
> CRAN BioC/rel BioC/dev
> [1,] "microSTASIS/0.1.0" "" "microSTASIS/0.99.2"
>
> The old procedure was to archive from CRAN once packages make it into
> BioC/rel (and have the CRAN web page link to the web page for this)?
>
> Best
> -k
>
> >>>>> Kern, Lori writes:
> >> Hello,
>
> > Thanks. In theory I should be picking this up automatically once the
> > packages appear in BioC release, and will then archive them from CRAN.
>
> > However, I'll be away for a few days, so if necessary please drop me a
> > reminder "sometimes next week" :-)
>
> > Best
> > -k
>
> >> In a follow up to a previous discussion, the following CRAN packages
> >> have been accepted to Bioconductor and added to the nightly builder.
> >> I expect them to build over night and be available after tomorrow
> >> afternoon through Bioconductor. Let us know if you need any other
> >> information to begin the archive process. The packages in questions
> >> are
>
> >> microSTASIS
> >> IFAA
>
> >> (maintainers are cc'd)
>
> >> Cheers,
>
> >> Lori Shepherd - Kern
>
> >> Bioconductor Core Team
>
> >> Roswell Park Comprehensive Cancer Center
>
> >> Department of Biostatistics & Bioinformatics
>
> >> Elm & Carlton Streets
>
> >> Buffalo, New York 14263
>
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