Dear Bioconductor Developers, Can you please help with an error message from R CMD check for the package IFAA?
The BioConductor platform produced the following error message when running R CMD check (http://bioconductor.org/checkResults/devel/bioc-LATEST/IFAA/nebbiolo1-checksrc.html): " BiocGenerics:::testPackage("IFAA") Error in BiocGenerics:::testPackage("IFAA") : unable to find unit tests, no subdir 'unitTests' Execution halted " However, the error is very strange because the subdirectory "unitTests" is there in the folder "inst". And we have previously passed the test of the package thru the github webpage (https://github.com/Bioconductor/Contributions/issues/2651). We have also tested it on our own computer and it did not have this error. Below is the output from our personal computer. (base) quranwu@MacBook-Pro-4 test % R CMD check --library=./ --no-vignettes --timings IFAA_0.99.9.tar.gz * using log directory ‘/Users/quranwu/Desktop/test/IFAA.Rcheck’ * using R version 4.2.1 (2022-06-23) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘IFAA/DESCRIPTION’ ... OK * this is package ‘IFAA’ version ‘0.99.9’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘IFAA’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed IFAA 12.723 0.146 72.684 MZILN 0.944 0.020 15.038 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK By any chance could it be because the IFAA package on CRAN got called when running BiocGenerics:::testPackage("IFAA") on the BioConductor platform? The IFAA package on CRAN indeed does not have the subdirectory of "unitTests". Thanks, Zhigang https://sites.google.com/view/zlab _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
