Hi, I would like advise about how to do gapped alignment with output from Solexa sequencing. We have a new virus and would like to know homology to known polymerase sequences. Does someone know if MAQ would be a good program for this purpose using gapped alignment? Or would it be best to do De Novo alignment and then use Blast? Thanks for any advise.
Lana Schaffer Biostatistics/Informatics The Scripps Research Institute DNA Array Core Facility La Jolla, CA 92037 (858) 784-2263 (858) 784-2994 [email protected] _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
