On 03/01/2010 12:40 AM, Johannes Rainer wrote: > dear all, > > I'm just wondering if anybody has already implemented a ChIP-seq peak > detection algorithm (like MACS, PeakSeq...) or plans to do so.
See http://bioconductor.org/packages/release/Software.html and search for chipseq, e.g., chipseq, ChIPseqR implement peak detection algorithms (though not MACS or PeakSeq; approximations of these algorithms are not difficult to implement using IRanges / Biostrings / ShortRead infrastructure). Martin > > bests, jo > -- Martin Morgan Computational Biology / Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: Arnold Building M1 B861 Phone: (206) 667-2793 _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
