thanks! I will have a look at them!
bests, jo On Mon, Mar 1, 2010 at 2:25 PM, Martin Morgan <[email protected]> wrote: > On 03/01/2010 12:40 AM, Johannes Rainer wrote: > > dear all, > > > > I'm just wondering if anybody has already implemented a ChIP-seq peak > > detection algorithm (like MACS, PeakSeq...) or plans to do so. > > See http://bioconductor.org/packages/release/Software.html and search > for chipseq, e.g., chipseq, ChIPseqR implement peak detection algorithms > (though not MACS or PeakSeq; approximations of these algorithms are not > difficult to implement using IRanges / Biostrings / ShortRead > infrastructure). > > Martin > > > > > bests, jo > > > > > -- > Martin Morgan > Computational Biology / Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N. > PO Box 19024 Seattle, WA 98109 > > Location: Arnold Building M1 B861 > Phone: (206) 667-2793 > -- Johannes Rainer, PhD Bioinformatics Group, Division Molecular Pathophysiology, Biocenter, Medical University Innsbruck, Fritz-Pregl-Str 3/IV, 6020 Innsbruck, Austria and Tyrolean Cancer Research Institute Innrain 66, 6020 Innsbruck, Austria Tel.: +43 512 570485 13 Email: [email protected] [email protected] URL: http://bioinfo.i-med.ac.at [[alternative HTML version deleted]] _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
