On Mon, Mar 1, 2010 at 5:25 AM, Martin Morgan <[email protected]> wrote:
> On 03/01/2010 12:40 AM, Johannes Rainer wrote: > > dear all, > > > > I'm just wondering if anybody has already implemented a ChIP-seq peak > > detection algorithm (like MACS, PeakSeq...) or plans to do so. > > See http://bioconductor.org/packages/release/Software.html and search > for chipseq, e.g., chipseq, ChIPseqR implement peak detection algorithms > (though not MACS or PeakSeq; approximations of these algorithms are not > difficult to implement using IRanges / Biostrings / ShortRead > infrastructure). > > Just to clarify, the chipseq package, while useful for chipseq in general, does not implement a peak detection method. Deepayan's method is implemented separately. > Martin > > > > > bests, jo > > > > > -- > Martin Morgan > Computational Biology / Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N. > PO Box 19024 Seattle, WA 98109 > > Location: Arnold Building M1 B861 > Phone: (206) 667-2793 > > _______________________________________________ > Bioc-sig-sequencing mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing > [[alternative HTML version deleted]] _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
