Ketil Malde <ke...@malde.org> writes: Hi Nick,
> However, it relies on the 'readBams' function -- i.e. lazy reading all > Bam1 records -- I added to the SamTools package (patches darcs-pullable from > http://malde.org/~ketil/biohaskell/SamTools). Did you have a look at this? I think you indicated you were positive to this earlier on, and currently, my builds are a bit complicated since this functionality is still missing. Also, seqloc still seems to depend on biocore (with no version dependency), and its orphan instances breaks with biocore 0.2 (which provides Integral etc for the Offset type). My patches can be pulled from http://malde.org/~ketil/biohaskell/{SamTools,SeqLoc} -k -- If I haven't seen further, it is by standing in the footprints of giants _______________________________________________ Biohaskell mailing list Biohaskell@biohaskell.org http://malde.org/cgi-bin/mailman/listinfo/biohaskell
