Have you thought of adding these to stackage? We are drawing our libraries from there. Bio haskell tools would be great to have on our commercial Haskell platform.
Gregg Sent from my iPhone FP Complete 617-396-4114 (office) 617-233-5504 (cell) On Mar 20, 2013, at 9:16 AM, Ketil Malde <ke...@malde.org> wrote: > > (CC: the biohaskell mailing list, in case somebody else is interested) > > Sönke Hahn <s...@zerobuzz.net> writes: > >>> Of course...we're trying to deprecate [the old biolib] in favor of a >>> set of smaller packages. :-) > >> That's interesting. Are they on hackage already? > > They should be, but I'm not sure how current or updated those versions > are. I tend to scratch my own itches first, please report any > inconsistencies! > > See also: > http://biohaskell.org/Libraries > > If there's specific functionality not yet covered, feel free to prod me, > or just factor it out from the old biolib. > >> http://open-projects.net/~shahn/darcs/biolib/ > > Great - pulling it now. > >> I just tested compilation with ghc-7.4.2. >> >> One of the patches changes the cabal constraints for binary. ghc-7.6.2 >> ships with binary-0.5.1.1 so it would be good to allow at least 0.5.*. >> My patch also allows 0.6.* and 0.7.*, which we already have on hackage. >> I tested compilation with binary-0.6.4.0 and binary-0.7.0.1 on >> ghc-7.6.2. So I guess allowing these newer binary versions is ok. > > About that: there is a small problem: strictness of binary changed in > 0.5. This means that for SFF files (454 sequences), the old code pulls > in the whole file (which can be gigabytes) in one go. If you use > biosff, the code there has been rewritten to work lazily with newer > versions of binary, but it is unfortunately quite a bit slower. > > -k > -- > If I haven't seen further, it is by standing in the footprints of giants > _______________________________________________ > Biohaskell mailing list > Biohaskell@biohaskell.org > http://malde.org/cgi-bin/mailman/listinfo/biohaskell _______________________________________________ Biohaskell mailing list Biohaskell@biohaskell.org http://malde.org/cgi-bin/mailman/listinfo/biohaskell
