Hi Ketil, isn't the new binary-0.7 lazy again or allows laziness? If you could update to 0.7 with laziness that would be of great use. Maybe Soenke's patch already allows laziness?
Gruss, Christian * Ketil Malde <ke...@malde.org> [20.03.2013 14:18]: > > (CC: the biohaskell mailing list, in case somebody else is interested) > > Sönke Hahn <s...@zerobuzz.net> writes: > > >> Of course...we're trying to deprecate [the old biolib] in favor of a > >> set of smaller packages. :-) > > > That's interesting. Are they on hackage already? > > They should be, but I'm not sure how current or updated those versions > are. I tend to scratch my own itches first, please report any > inconsistencies! > > See also: > http://biohaskell.org/Libraries > > If there's specific functionality not yet covered, feel free to prod me, > or just factor it out from the old biolib. > > > http://open-projects.net/~shahn/darcs/biolib/ > > Great - pulling it now. > > > I just tested compilation with ghc-7.4.2. > > > > One of the patches changes the cabal constraints for binary. ghc-7.6.2 > > ships with binary-0.5.1.1 so it would be good to allow at least 0.5.*. > > My patch also allows 0.6.* and 0.7.*, which we already have on hackage. > > I tested compilation with binary-0.6.4.0 and binary-0.7.0.1 on > > ghc-7.6.2. So I guess allowing these newer binary versions is ok. > > About that: there is a small problem: strictness of binary changed in > 0.5. This means that for SFF files (454 sequences), the old code pulls > in the whole file (which can be gigabytes) in one go. If you use > biosff, the code there has been rewritten to work lazily with newer > versions of binary, but it is unfortunately quite a bit slower. > > -k > -- > If I haven't seen further, it is by standing in the footprints of giants > _______________________________________________ > Biohaskell mailing list > Biohaskell@biohaskell.org > http://malde.org/cgi-bin/mailman/listinfo/biohaskell
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