Thomas,
I'm getting a strange error when serving reference sequence from an
EmblDataSource via the /das/[dsn]/dna request. No matter what the dna
query ( dna?segment=ACC, dna?segment=ACC:1,100, ...) I receive the same
index out of range exception. Is this value significant for any reason?
The entry_points request returns an accurate list, leading me to believe
the sequences were loaded from the embl file correctly.
I'm using cvs versions of xdas and biojava.
michael
---
2002-01-09 16:32:34 - /das: DazzleServerMain: Error writing DNA document -
java.lang.IndexOutOfBoundsException: Index out of range: -1392881928
at
org.biojava.bio.seq.io.SubArraySymbolList.symbolAt(SubArraySymbolList.java:77)
at
org.biojava.bio.symbol.AbstractSymbolList$SubList.getAlphabet(AbstractSymbolList.java:169)
at
org.biojava.bio.symbol.AbstractSymbolList$SubList.seqString(AbstractSymbolList.java:208)
at
org.biojava.bio.symbol.AbstractSymbolList$SubList.subStr(AbstractSymbolList.java:216)
at
org.biojava.servlets.dazzle.DazzleServlet.dnaCommand(DazzleServlet.java:680)
at
org.biojava.servlets.dazzle.DazzleServlet.doGet(DazzleServlet.java:241)
at javax.servlet.http.HttpServlet.service(HttpServlet.java)
at javax.servlet.http.HttpServlet.service(HttpServlet.java)
at org.apache.tomcat.facade.ServletHandler.doService(Unknown
Source)
at org.apache.tomcat.core.Handler.invoke(Unknown Source)
at org.apache.tomcat.core.Handler.service(Unknown Source)
at org.apache.tomcat.facade.ServletHandler.service(Unknown Source)
at org.apache.tomcat.core.ContextManager.internalService(Unknown
Source)
at org.apache.tomcat.core.ContextManager.service(Unknown Source)
at
org.apache.tomcat.modules.server.Http10Interceptor.processConnection(Unknown
Source)
at org.apache.tomcat.util.net.TcpWorkerThread.runIt(Unknown
Source)
at
org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(Unknown
Source)
at java.lang.Thread.run(Thread.java:484)
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