Hi there, I'm trying to write a small program that reads in only the HIT section of BLAST output (i.e. starting with ">"), by instantiating a HitSectionSAXParser class, and I noticed that the BlastLikeVersionSupport variable oVersion needs to be already populated by the time the class is instantiated (e.g. with BlastLikeVersionSupport.iProgram = some value). Thing is, the iProgram member currently has a private scope, and there is no method available to set it to some other value (i.e. setProgram()).
I know that from the look of the *SAXParser classes, they were written specifically only to process the full BLAST results. Could we make all *SAXParser classes public, as well as make setters for the BlastLikeVersionSupport class? Let me know what you think. Thanks! Roy Park Scientific Programmer Bioinformatics Department Lexicon Genetics Incorporated The Woodlands, Texas 77380 T: (281) 863-3245 F: (281) 863-8092 [EMAIL PROTECTED] *************************************************************************** The contents of this communication are intended only for the addressee and may contain confidential and/or privileged material. If you are not the intended recipient, please do not read, copy, use or disclose this communication and notify the sender. Opinions, conclusions and other information in this communication that do not relate to the official business of my company shall be understood as neither given nor endorsed by it. *************************************************************************** _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
