Hi. Just some simple errors that I think may be spelling related. Apologies for it being this shallow, but I don't know anything about bioinformatics - period. However - I hope these observations prove a little useful.
Documentation - Overview. (original) "Hopefuly, as the project matures, each of these areas will be fleshed out. Also, hopefuly we will develop code for:" (suggested correction) *Hopefully*, ... Also, *hopefully* we will ... Javadoc - package org.biojava.bio.dist Description for DistributionTools appears not to follow the format of other class summaries. (original) "Title: DistributionTools.java Description: A static class to hold static methods for calculations and maniputlations using Distributions." (suggested correction) ... and *manipulations* using Distributions. package - org.biojava.bio.dp class statepath (original) Extends the Alignment interface so that it is explicitly used to represent a state path through an HMM, and the associated emitted sequence and likelyhoods. (suggested correction) Extends the Alignment interface so that it is explicitly used to represent a state path through an HMM, and the associated emitted sequence and *likelihoods*. class BaumWelchTrainer (original) Train a hidden markov model using maximum likelyhood. (suggested correction) Train a hidden markov model using maximum *likelihood*. class WMAsMM (original) Wraps a weight matrix up so that it appears to be a very simple hmm. (suggested correction) Wraps a weight matrix up so that it appears to be a very simple HMM. That's all for now... _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
