Hi, Sorry for the hand holding question. I am trying to wrap the output of a Perl script that finds CpG islands (cpgi130.pl) using Runtime.exec with little success. Has anyone ever built a class that can find CpG islands in Sequence objects and build features with RangeLocations?
Other solution: has anyone ever try to write a wrapper that would use the output of any program of the EMBOSS suite? It has some CpG island finding software. Anyhelp would be much appreciated P.S.: there has been a call for an algorithm repository on Usenet. Would it be possible/interesting to create such a repository for classes built with BioJava that could be of interest to other rookies like me. Just an idea... Sylvain =================================================================== Sylvain Foisy, Ph. D. Directeur - operations / Project Manager BioneQ - Reseau quebecois de bio-informatique U. de Montreal / Genome-Quebec Addresse postale: Departement de biochimie Pavillon principal 2900, boul. �douard-Montpetit Montr�al (Qu�bec) H3T 1J4 Tel: (514) 343-6111 x.4066 Courriel: [EMAIL PROTECTED] =================================================================== _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
