hi there I am using HT-blast on sgi system. I have implemented both blast n and blast p services and used Blast2HTML program for my output and it worked fine. But when i used Blast2HTML program with my output of PSIblast it is not woking and giving me this error: real 2.43 user 1.87 sys 0.11 -->--IFTNKGVDFSATLMSVPAFFSKSSSLYNPIIYVLMNKQFR<-- -->GVIHDCKISDIVDTAMPITICIAYFNNCLNPLFYGFLGKKFK<-- --> I K D T M + + ++ NP+ Y + K+F+.................DONE M ROUND 2 <-- Exception in thread "main" java.lang.IllegalArgumentException: Only accept array of three strings, all of same length at org.biojava.bio.program.blast2html.AlignmentMarker.alignment2HTML(AlignmentMar ker.java:194, Compiled Code) at org.biojava.bio.program.blast2html.HTMLRenderer.drawSubAlignment(HTMLRenderer. java:666, Compiled Code) at org.biojava.bio.program.blast2html.HTMLRenderer.drawCurrentAlignment(HTMLRende rer.java:806, Compiled Code) at org.biojava.bio.program.blast2html.HTMLRenderer.writeCurrentHSP(HTMLRenderer.j ava:635, Compiled Code) at org.biojava.bio.program.blast2html.Blast2HTMLHandler.endElement(Blast2HTMLHand ler.java:286, Compiled Code) at org.biojava.bio.program.sax.AbstractNativeAppSAXParser.endElement(AbstractNati veAppSAXParser.java:291, Compiled Code) at org.biojava.bio.program.sax.HitSectionSAXParser.interpretHSP(HitSectionSAXPars er.java:359, Compiled Code) at org.biojava.bio.program.sax.HitSectionSAXParser.firstHSPEvent(HitSectionSAXPar ser.java:279, Compiled Code) at org.biojava.bio.program.sax.HitSectionSAXParser.interpret(HitSectionSAXParser. java:250, Compiled Code) at org.biojava.bio.program.sax.HitSectionSAXParser.parse(HitSectionSAXParser.java :117, Compiled Code) at org.biojava.bio.program.sax.BlastSAXParser.hitsSectionReached(BlastSAXParser.j ava:581, Compiled Code) at org.biojava.bio.program.sax.BlastSAXParser.interpret(BlastSAXParser.java:333, Compiled Code) at org.biojava.bio.program.sax.BlastSAXParser.parse(BlastSAXParser.java:161, Compiled Code) at org.biojava.bio.program.sax.BlastLikeSAXParser.onNewDataSet(BlastLikeSAXParser .java:308, Compiled Code) at org.biojava.bio.program.sax.BlastLikeSAXParser.interpret(BlastLikeSAXParser.ja va:269, Compiled Code) at org.biojava.bio.program.sax.BlastLikeSAXParser.parse(BlastLikeSAXParser.java:1 62, Compiled Code) at eventbasedparsing.Blast2HTML.main(Blast2HTML.java:272, Compiled Code)
i could not understand the error though i went through blast2HTMl.java please advice. with regards dinesh _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
