I just downloaded the genbank file NT_010783 from the ncbi. Our parsers spewed lots of errors about features not being within the range 1..0, and after a little poking arround in the code, I found that a zero length sequence was being generated. In despiration, I looked at the physical genbank file. Instead of sequences, it contains a CONTIG section with a single big join() describing how to build it from other entries.
Has anybody modified our genbank parser to process entries like this? To be honest, I'm not quite sure where to start.
Matthew
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