Once upon a time, Y D Sun wrote:
> Dear all,
>
> How to filter the complement feature in CDS? I get the features in a CDS
> table using the following code:
>
> Map m = f.getAnnotation().asMap(); // f is a
> Feature containing a CDS table
>
> String ge = m.get("gene").toString(); // ok
> String pr = m.get("product").toString(); // ok
> ...
> String co = m.get("complement").toString(); // return nothing
> although the CDS table includes complement(int..int).
The complement(xxx..yyy) stuff is the feature's location, rather
than part of the qualifier-value data. In BioJava, this will
be represented by a feature having a location from xxx to yyy,
and being on the negative strand.
For more information, see:
http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html
Thomas.
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