> -----Original Message----- > From: Thomas Down [mailto:[EMAIL PROTECTED] > Sent: 08 July 2003 13:49 > To: Y D Sun > Cc: [EMAIL PROTECTED] > Subject: Re: [Biojava-l] Complement feature in CDS table > > > Once upon a time, Y D Sun wrote: > > Dear all, > > > > How to filter the complement feature in CDS? I get the > features in a > > CDS table using the following code: > > > > Map m = f.getAnnotation().asMap(); // f is a > > Feature containing a CDS table > > > > String ge = m.get("gene").toString(); // ok > > String pr = m.get("product").toString(); // ok > > ... > > String co = m.get("complement").toString(); // return nothing > > although the CDS table includes complement(int..int). > > The complement(xxx..yyy) stuff is the feature's location, > rather than part of the qualifier-value data. In BioJava, > this will be represented by a feature having a location from > xxx to yyy, and being on the negative strand. >
I want to check if a CDS contains the keyword "complement". Is there any method to do so? George > For more information, see: > http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.htm l Thomas. _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
