So, then I try to download the jar file. I download all three required files (biojava.jar, bytecode.jar, and xerces.jar). I add them to my classpath (and have confirmed that the classpath is correct and is remembered by the machine in my env).
So, with a set of jars, I decided to try out the demo. Following the instructions on the website (in the "getting started" section), I cd to the demos/, and type the following:
/home/user/biojava/>javac seq/TestEmbl.java
I get a whole slew of errors, of which all look like they have to do with the fact that it can't find the packages in org.biojava.bio, etc. Now, I can see this package structure in
/home/user/biojava/main/org/biojava/bio, etc.
And I was trying to execute from /home/user/biojava/demos
So, why can't it find the packages? I'm not new to java, but it's been a long time since I've had to deal with packages, and I can't recall how to make biojava see where the packages are located. Any suggestions?
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