In case it makes a difference, I forgot to mention that I am using j2sdk1.5.0beta on an Intel based RedHat 9.1 machine.

Matt

p.s. Sorry for the "intsall" mispell


From: "Orion Hunter" <[EMAIL PROTECTED]>
To: [EMAIL PROTECTED]
Subject: [Biojava-l] Intsall Problems
Date: Fri, 27 Feb 2004 20:39:21 +0000

I am trying to install biojava. I d/l biojava1.3.1, unziped and untarred it. I installed ANT, but I am confused. It specifies to execute ANT from the "biojava-live" directory, but I cannot find this directory, nor any build.xml files anywhere.

So, then I try to download the jar file. I download all three required files (biojava.jar, bytecode.jar, and xerces.jar). I add them to my classpath (and have confirmed that the classpath is correct and is remembered by the machine in my env).

So, with a set of jars, I decided to try out the demo. Following the instructions on the website (in the "getting started" section), I cd to the demos/, and type the following:

/home/user/biojava/>javac seq/TestEmbl.java

I get a whole slew of errors, of which all look like they have to do with the fact that it can't find the packages in org.biojava.bio, etc. Now, I can see this package structure in

/home/user/biojava/main/org/biojava/bio, etc.

And I was trying to execute from /home/user/biojava/demos

So, why can't it find the packages? I'm not new to java, but it's been a long time since I've had to deal with packages, and I can't recall how to make biojava see where the packages are located. Any suggestions?

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