Hello -
At the moment there are no parsers for XEMBL, GenBankXML or ASN.1, They
could both be easily made if someone had that time. GenBankXML could
easily draw on a SAX or DOM parser to pass events to the BioJava
SequenceBuilders (using some kind of adapter). ASN.1 would need a more
custom parser but because it is highly structured that shouldn't be too
hard.
Any volunteers?
- Mark
"Gang Wu" <[EMAIL PROTECTED]>
Sent by: [EMAIL PROTECTED]
06/02/2004 11:21 PM
Please respond to gwu
To: "Bio-Java" <[EMAIL PROTECTED]>
cc:
Subject: [Biojava-l] Genbank ASN.1 or XML parser
Hi everyone,
I just tried out the APIs for parsing Genbank format files. Though it
works
well, I still wonder if there are APIs for parsing Genbank files in ASN.1
or
XML formats because the Genbank format was designed for human being and
the
ASN.1 and XML formats should be more reliable for data exchange.
Gang Wu
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