Another problem is you have to include "c:\bio-java\demos" in your CLASSPATH and call the TestEmbl as "seq.TestEmbl" because the class package started from "c:\bio-java\demos\seq". So the command line should be like:
c:\j2sdk1.4.2_04\jre\bin\java -cp CLASSPATH;c:\bio-java\demos seq.TestEmbl C:\bio-java\demos\seq\AL121903.embl gang -----Original Message----- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] Behalf Of Selmar Leeuwenburgh Sent: Sunday, August 29, 2004 11:30 AM To: [EMAIL PROTECTED] Subject: [Biojava-l] java.lang.NoClassDefFoundError error Hi, I have a question. I know there are some messages of this subject in the list, but I can't find the right answer. Do someone know why I get java.lang.NoClassDefFoundError error? I get the same error on my Linux computer with mandrake. the command: C:\>c:\j2sdk1.4.2_04\bin\java c:\bio-java\demos\seq\TestEmbl C:\bio-java\demos\s eq\AL121903.embl Exception in thread "main" java.lang.NoClassDefFoundError: c:\bio-java\demos\seq \TestEmbl the content of the ext directory: Directory of C:\j2sdk1.4.2_04\jre\lib\ext 29/08/2004 16:24 <DIR> . 29/08/2004 16:24 <DIR> .. 29/08/2004 16:11 2,385,919 biojava-1.30-jdk14.jar 29/08/2004 16:24 60,044 bytecode-0.91.jar 22/02/2004 23:18 8,896 dnsns.jar 29/08/2004 16:23 29,871 jakarta-regexp.jar 22/02/2004 23:21 53,247 ldapsec.jar 22/02/2004 23:50 769,335 localedata.jar 29/08/2004 15:58 111,374 sunjce_provider.jar 29/08/2004 16:24 1,783,457 xerces.jar 8 File(s) 5,202,143 bytes 2 Dir(s) 10,133,127,168 bytes free My env variable are C:\bio-java\demos\seq>set ALLUSERSPROFILE=C:\Documents and Settings\All Users APPDATA=C:\Documents and Settings\Selmar\Application Data CLASSPATH=C:\j2sdk1.4.2_04\jre\lib\ext\biojava-1.30-jdk14.jar;C:\j2sdk1.4.2_ 04\j re\lib\ext\xerces.jar;C:\j2sdk1.4.2_04\jre\lib\ext\bytecode-0.91.jar;C:\j2sd k1.4 .2_04\jre\lib\ext\jakarta-regexp.jar; CommonProgramFiles=C:\Program Files\Common Files COMPUTERNAME=SELMAR ComSpec=C:\WINDOWS\system32\cmd.exe HOMEDRIVE=C: HOMEPATH=\ LOGONSERVER=\\SELMAR NUMBER_OF_PROCESSORS=2 OS=Windows_NT Path=C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\Program Files\Co mmon Files\Adaptec Shared\System;C:\WINDOWS\system32\nls;C:\WINDOWS\system32\nls \ENGLISH;C:\Program Files\UltraEdit;C:\Sun\AppServer\bin PATHEXT=.COM;.EXE;.BAT;.CMD;.VBS;.VBE;.JS;.JSE;.WSF;.WSH PROCESSOR_ARCHITECTURE=x86 PROCESSOR_IDENTIFIER=x86 Family 15 Model 2 Stepping 9, GenuineIntel PROCESSOR_LEVEL=15 PROCESSOR_REVISION=0209 ProgramFiles=C:\Program Files PROMPT=$P$G SystemDrive=C: SystemRoot=C:\WINDOWS TEMP=C:\DOCUME~1\Selmar\LOCALS~1\Temp TMP=C:\DOCUME~1\Selmar\LOCALS~1\Temp ULTRAMON_LANGDIR=C:\Program Files\UltraMon\Resources\en USERDOMAIN=SELMAR USERNAME=Selmar USERPROFILE=C:\Documents and Settings\Selmar windir=C:\WINDOWS _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
