Good old classpath error would be my guess. try:
cd bio-java\demos c:\j2sdk1.4.2_04\bin\java -cp . seq/TestEmbl this should give you the following error (output is from linux): [EMAIL PROTECTED] demos]$ java -cp . seq/TestEmbl Exception in thread "main" java.lang.NoClassDefFoundError: org/biojava/bio/symbol/Alphabet This means that you don't have the biojava.jar mounted. In my case, I can do it with: [EMAIL PROTECTED] demos]$ java -cp ~/cvs/bias/biojava.jar:. seq/TestEmbl seq/AL121903.embl >HSDJ155G6 has 191 features [rest of normal output follows] java classpath is a bit tricky at the beginning but you get used to it. You can also use a IDE that takes care of everything for you. Francois On Sun, 2004-08-29 at 11:29, Selmar Leeuwenburgh wrote: > Hi, > > I have a question. I know there are some messages of this subject in the > list, but I can't find the right answer. > > Do someone know why I get java.lang.NoClassDefFoundError error? I get the > same error on my Linux computer with mandrake. > > > the command: > > C:\>c:\j2sdk1.4.2_04\bin\java c:\bio-java\demos\seq\TestEmbl > C:\bio-java\demos\s > eq\AL121903.embl > Exception in thread "main" java.lang.NoClassDefFoundError: > c:\bio-java\demos\seq > \TestEmbl > > the content of the ext directory: > > Directory of C:\j2sdk1.4.2_04\jre\lib\ext > > 29/08/2004 16:24 <DIR> . > 29/08/2004 16:24 <DIR> .. > 29/08/2004 16:11 2,385,919 biojava-1.30-jdk14.jar > 29/08/2004 16:24 60,044 bytecode-0.91.jar > 22/02/2004 23:18 8,896 dnsns.jar > 29/08/2004 16:23 29,871 jakarta-regexp.jar > 22/02/2004 23:21 53,247 ldapsec.jar > 22/02/2004 23:50 769,335 localedata.jar > 29/08/2004 15:58 111,374 sunjce_provider.jar > 29/08/2004 16:24 1,783,457 xerces.jar > 8 File(s) 5,202,143 bytes > 2 Dir(s) 10,133,127,168 bytes free > > My env variable are > > C:\bio-java\demos\seq>set > ALLUSERSPROFILE=C:\Documents and Settings\All Users > APPDATA=C:\Documents and Settings\Selmar\Application Data > CLASSPATH=C:\j2sdk1.4.2_04\jre\lib\ext\biojava-1.30-jdk14.jar;C:\j2sdk1.4.2_ > 04\j > re\lib\ext\xerces.jar;C:\j2sdk1.4.2_04\jre\lib\ext\bytecode-0.91.jar;C:\j2sd > k1.4 > .2_04\jre\lib\ext\jakarta-regexp.jar; > CommonProgramFiles=C:\Program Files\Common Files > COMPUTERNAME=SELMAR > ComSpec=C:\WINDOWS\system32\cmd.exe > HOMEDRIVE=C: > HOMEPATH=\ > LOGONSERVER=\\SELMAR > NUMBER_OF_PROCESSORS=2 > OS=Windows_NT > Path=C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\Program > Files\Co > mmon Files\Adaptec > Shared\System;C:\WINDOWS\system32\nls;C:\WINDOWS\system32\nls > \ENGLISH;C:\Program Files\UltraEdit;C:\Sun\AppServer\bin > PATHEXT=.COM;.EXE;.BAT;.CMD;.VBS;.VBE;.JS;.JSE;.WSF;.WSH > PROCESSOR_ARCHITECTURE=x86 > PROCESSOR_IDENTIFIER=x86 Family 15 Model 2 Stepping 9, GenuineIntel > PROCESSOR_LEVEL=15 > PROCESSOR_REVISION=0209 > ProgramFiles=C:\Program Files > PROMPT=$P$G > SystemDrive=C: > SystemRoot=C:\WINDOWS > TEMP=C:\DOCUME~1\Selmar\LOCALS~1\Temp > TMP=C:\DOCUME~1\Selmar\LOCALS~1\Temp > ULTRAMON_LANGDIR=C:\Program Files\UltraMon\Resources\en > USERDOMAIN=SELMAR > USERNAME=Selmar > USERPROFILE=C:\Documents and Settings\Selmar > windir=C:\WINDOWS > > > _______________________________________________ > Biojava-l mailing list - [EMAIL PROTECTED] > http://biojava.org/mailman/listinfo/biojava-l _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
