The internal use was mine (I was just using it as a substitute for a
namespace). Maybe we should upgrade it to be compatable with IBM or
Taverna?
- Mark
Michael Heuer <[EMAIL PROTECTED]>
Sent by: [EMAIL PROTECTED]
06/16/2005 03:27 AM
To: Gary Bader <[EMAIL PROTECTED]>
cc: [EMAIL PROTECTED], Mark Schreiber/GP/[EMAIL PROTECTED]
Subject: Re: [Biojava-l] LSID
The biojava LSID and the IBM LSID are slightly different APIs, the IBM one
the more complete of the two. There also are/were LSID client
implementations that I'm not very familiar with in taverna [0] and for
whatever reason in an email client called Haystack [1].
I would move the biojava LSID implementation for deprecation after
release of version 1.4.x but note that it is used internally, see e.g.
org/biojava/utils/lsid/class-use/LifeScienceIdentifier.html
in the 1.4pre2 javadocs.
michael
[0] http://taverna.sf.net
[1] http://haystack.lcs.mit.edu
On Tue, 14 Jun 2005, Gary Bader wrote:
> LSID is still cooking, but is not widely accepted, but there are a
> number of people still pushing for it. IBM is the current caretaker.
> It remains to be seen whether it will be widely adopted by e.g. the
> sequence databases.
>
> http://lsid.sourceforge.net/
>
> Gary
>
> [EMAIL PROTECTED] wrote:
> > Hello -
> >
> > Does anyone know what happened to the Life Science Identifier
proposal? I
> > notice that there are some classes in biojava to handle it but I'm not
> > sure it was ever widely accepted by the community. Come to think of
it,
> > does anyone know what happened to the I3C who proposed it?
> >
> > If it's all dead or dying maybe it should be deprecated or removed at
a
> > later date?
> >
> > - Mark
> >
> > Mark Schreiber
> > Principal Scientist (Bioinformatics)
> >
> > Novartis Institute for Tropical Diseases (NITD)
> > 10 Biopolis Road
> > #05-01 Chromos
> > Singapore 138670
> > www.nitd.novartis.com
> >
> > phone +65 6722 2973
> > fax +65 6722 2910
> >
> > _______________________________________________
> > Biojava-l mailing list - Biojava-l@biojava.org
> > http://biojava.org/mailman/listinfo/biojava-l
> _______________________________________________
> Biojava-l mailing list - Biojava-l@biojava.org
> http://biojava.org/mailman/listinfo/biojava-l
>
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