Hello = I have recently added a new example to biojava in anger (www.biojava.org/docs/bj_in_anger/) that explains a little about how the biojava sequence I/O system works and how you can customize it. If you find the methods of SeqIOTools a little restrictive then this will be of interest to you. http://www.biojava.org/docs/bj_in_anger/seqioecho.html
I have also completely rewritten the Fasta parser example. http://www.biojava.org/docs/bj_in_anger/FastaParser.htm Enjoy! - Mark Mark Schreiber Principal Scientist (Bioinformatics) Novartis Institute for Tropical Diseases (NITD) 10 Biopolis Road #05-01 Chromos Singapore 138670 www.nitd.novartis.com phone +65 6722 2973 fax +65 6722 2910 _______________________________________________ Biojava-l mailing list - Biojava-l@biojava.org http://biojava.org/mailman/listinfo/biojava-l