Hi Everyone, I finally finished loading some Genbank genome sequences(Arabidopsis thaliana and C. elegans) into my MySQL(5.0.19 on Redhad AS 4) BioSQL database though the load_seqdatabase.pl works extremely slow(If turning on -debug, a lot of messages about not able to find adaptor class for Bio::Annotation::TypeManager, is this about the dynamic library loading issue mention in one of Hilmar's message?).
Now I'm writing views and stored procedures so other projects can easily retrieve specific information. It's quite easy to write views like showing all organisms, showing all version information etc. But so far I have not figured out how to write a SQL statement to list all genes corresponding to the genbank files. Can anyone show me how to get the information or let me know where to find related guide? Thanks in advance. Gang _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
