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• • Re: [Biojava-l] [Biojava-dev] Request for help! Richard Holland
  • Re: [Biojava-l] Request for help! Richard Holland
• [Biojava-l] Fwd: biojava error Kavita Agarwal
  • [Biojava-l] Fwd: biojava error Kavita Agarwal
• [Biojava-l] Where can I find the demo of using svm in biojava? zt_2003
• [Biojava-l] biojava error Kavita Agarwal
  • Re: [Biojava-l] biojava error Richard Holland
  • Re: [Biojava-l] biojava error Andreas Prlic
  • Re: [Biojava-l] biojava error Mark Schreiber
  • Re: [Biojava-l] biojava error Andy Yates
  • Re: [Biojava-l] biojava error Mark Schreiber
  • Re: [Biojava-l] biojava error Andreas Prlic
  • [Biojava-l] biojava digital signature Andreas Prlic
• [Biojava-l] problem in initialising DNATools Kavita Agarwal
  • Re: [Biojava-l] problem in initialising DNATools Richard Holland
• [Biojava-l] Pattern matching Jerome LANE
  • Re: [Biojava-l] Pattern matching mark . schreiber
• [Biojava-l] Pattern Jerome LANE
• [Biojava-l] get Sequence by GeneID Christian Köberle
  • Re: [Biojava-l] get Sequence by GeneID Richard Holland
• [Biojava-l] NCBISequenceDB getSequence failed Christian Köberle
  • Re: [Biojava-l] NCBISequenceDB getSequence failed Richard Holland
• [Biojava-l] BioJava 1.5 Released Richard Holland
• [Biojava-l] Biojava 1.5 beta3 Released Mark Schreiber
• [Biojava-l] question about pdb reader Jun Gao
  • Re: [Biojava-l] question about pdb reader Andreas Prlic
• [Biojava-l] Extracting information from Genbank Orest Kozyar
  • Re: [Biojava-l] Extracting information from Genbank Orest Kozyar
• [Biojava-l] question about pdb x-ray information Jun Gao
  • Re: [Biojava-l] question about pdb x-ray information Andreas Prlic
  • Re: [Biojava-l] question about pdb x-ray information Andreas Prlic
• [Biojava-l] Secondary Structure data from PDB file Andrew Walsh
  • Re: [Biojava-l] Secondary Structure data from PDB file Andreas Prlic
• [Biojava-l] KEGG Interface Christian Köberle
  • Re: [Biojava-l] KEGG Interface Mark Schreiber
  • Re: [Biojava-l] KEGG Interface Christian Köberle
• [Biojava-l] [HMM] detecting several instances of the same motif fails Evert-Jan Blom
  • Re: [Biojava-l] [HMM] detecting several instances of the same motif fails Mark Schreiber
• [Biojava-l] Another Project Contributor? T. Thomas Cheng
• Re: [Biojava-l] how to set the “token” para meter? mark . schreiber
• [Biojava-l] how to set the “token” parameter? zt_2003
• Re: [Biojava-l] [Biojava-dev] Project Contribution. Mark Schreiber
• [Biojava-l] Generate Graphics with BioJava Bernhard Heinzel
  • Re: [Biojava-l] Generate Graphics with BioJava Mark Schreiber
• [Biojava-l] ABIFParser question Heather Kent
  • Re: [Biojava-l] ABIFParser question Mark Schreiber
• [Biojava-l] query rohit reja
  • Re: [Biojava-l] query Mark Schreiber
  • [Biojava-l] query rohit reja
  • [Biojava-l] query rohit reja
  • Re: [Biojava-l] query Mark Schreiber
  • [Biojava-l] Query rohit reja
  • Re: [Biojava-l] Query Tom Oinn
  • Re: [Biojava-l] Query Ola Spjuth
• [Biojava-l] Ensembl Transcript ID Christian Köberle
• [Biojava-l] Biojavax and hibernate problems bertrand beckert
  • Re: [Biojava-l] Biojavax and hibernate problems Zagato
  • Re: [Biojava-l] Biojavax and hibernate problems Zagato
• Re: [Biojava-l] Biojava MassCalc george waldon
• [Biojava-l] Question on FlexibleAlignment Russ Kepler
  • Re: [Biojava-l] Question on FlexibleAlignment Eric Haugen
• Re: [Biojava-l] Calculate mass and pI for a protein containingambiguity symbols george waldon
• [Biojava-l] Calculate mass and pI for a protein containing ambiguity symbols Susy Griffiths
  • Re: [Biojava-l] Calculate mass and pI for a protein containing ambiguity symbols Mark Schreiber
• [Biojava-l] RichSequence.IOTools Kaur Jaanson
  • Re: [Biojava-l] RichSequence.IOTools Zagato
  • Re: [Biojava-l] RichSequence.IOTools Mark Schreiber
  • Re: [Biojava-l] RichSequence.IOTools Kaur Jaanson
• [Biojava-l] State of the nation mark . schreiber
  • Re: [Biojava-l] State of the nation Mark Fortner
  • Re: [Biojava-l] State of the nation Egon Willighagen
  • [Biojava-l] biojava/biojavax Sofia Burvall
  • Re: [Biojava-l] biojava/biojavax Mark Schreiber
• [Biojava-l] Joseph Bedell is out of the office. Joseph Bedell
  • [Biojava-l] Joseph Bedell is out of the office. Joseph Bedell
• [Biojava-l] Phyloinformatics Summer of Code Hilmar Lapp
• [Biojava-l] BioJava 1.5 versus BioJava 2 Eric Gibert
  • Re: [Biojava-l] BioJava 1.5 versus BioJava 2 Mark Schreiber
  • Re: [Biojava-l] BioJava 1.5 versus BioJava 2 Eric Gibert
• [Biojava-l] Uniprot files Sofia Burvall
  • Re: [Biojava-l] Uniprot files george waldon
• [Biojava-l] Having problems using biojava regex. Charles Danko
  • Re: [Biojava-l] Having problems using biojava regex. Mark Schreiber
  • Re: [Biojava-l] Having problems using biojava regex. Charles Danko
  • Re: [Biojava-l] Having problems using biojava regex. mark . schreiber
• [Biojava-l] Ambiguity consensus string search Charles Danko
  • Re: [Biojava-l] Ambiguity consensus string search Michael Heuer
• [Biojava-l] Biojava plugin Dr. Christoph Gille
• Re: [Biojava-l] [Bioperl-l] New Article on Approaches to Web Development for Bioinformatics Mauricio Herrera Cuadra
  • Re: [Biojava-l] [Bioperl-l] New Article on Approaches to Web Development for Bioinformatics Alex Amies
• [Biojava-l] [BioJava] New Article Approaches to Web Development for Bioinformatics Alex Amies
  • Re: [Biojava-l] [BioJava] New Article Approaches to Web Development for Bioinformatics Mark Schreiber
• [Biojava-l] (pre-Singapore) BioSQL ??? Zagato
  • Re: [Biojava-l] (pre-Singapore) BioSQL ??? mark . schreiber
  • Re: [Biojava-l] (pre-Singapore) BioSQL ??? Zagato
• [Biojava-l] biojava.utils.bytecode Alain Favre
  • Re: [Biojava-l] biojava.utils.bytecode Mark Schreiber
• [Biojava-l] case-sensitive sequences Ilhami Visne
  • Re: [Biojava-l] case-sensitive sequences ilhami visne
  • Re: [Biojava-l] case-sensitive sequences Mark Schreiber
  • Re: [Biojava-l] case-sensitive sequences ilhami visne
  • Re: [Biojava-l] case-sensitive sequences Ilhami Visne
  • Re: [Biojava-l] case-sensitive sequences Mark Schreiber
  • Re: [Biojava-l] case-sensitive sequences ilhami visne
  • [Biojava-l] case-sensitive sequences vineith kaul
  • Re: [Biojava-l] case-sensitive sequences Richard Holland
• [Biojava-l] [ANN]VTD-XML 2.0 Jimmy Zhang
• [Biojava-l] Job opportunity - Bioinformatics Software Developer Sanjay Kumar
• [Biojava-l] Final Call for Papers NETTAB 2007 Paolo Romano
• [Biojava-l] Conversion Applied Bioisystems MALDI Voyager DE-STR .dat file into peak list Mark Titulaer
• [Biojava-l] Tokenization Salman Tahir
• [Biojava-l] New Zealand bioinformatician vacancy Smithies, Russell
• [Biojava-l] Use Of Blosum62 Saif Ur-Rehman
  • Re: [Biojava-l] Use Of Blosum62 Saif Ur-Rehman
  • Re: [Biojava-l] Use Of Blosum62 Andreas Dräger
• [Biojava-l] Variable modifications to Protein sequences Salman Tahir
  • Re: [Biojava-l] Variable modifications to Protein sequences Mark Schreiber
• [Biojava-l] HMM Andreas Draeger
• [Biojava-l] IntegerAlphabet, creating Symbols Tilman Sauer
• [Biojava-l] Biojava 1.5 beta2 Released Mark Schreiber
• [Biojava-l] High Order HMM Denis Yuen
  • Re: [Biojava-l] High Order HMM Mark Schreiber
• Re: [Biojava-l] Restriction Mapper - Thread (or dual core cpu) problem mark . schreiber
• [Biojava-l] Restriction Mapper - Thread (or dual core cpu) problem ilhami visne
• Re: [Biojava-l] [Biojava-dev] Willing to Contribute in BioJava Mark Schreiber
• [Biojava-l] Willing to Contribute in BioJava Sulaman Nawaz
• [Biojava-l] Using REstriction Mapper ashish mittal
  • Re: [Biojava-l] Using REstriction Mapper mark . schreiber
• [Biojava-l] Looking forward for suggestions Ammad Ud Din
• [Biojava-l] Query to blast.. on Internet. Karl Harvey
• [Biojava-l] A problem parsing Blast XML output (blastN vs. blastP) Benoit VARVENNE
  • Re: [Biojava-l] A problem parsing Blast XML output (blastN vs. blastP) David Huen
  • Re: [Biojava-l] A problem parsing Blast XML output (blastN vs. blastP) Benoit VARVENNE
• [Biojava-l] Looking For Project Sulaman Malik
• [Biojava-l] Open JDK Mark Schreiber
• [Biojava-l] New To BioJava.org, right in the question. Dunarel Badescu
  • [Biojava-l] Fellowships for Junior Scientists Remo Sanges
• Re: [Biojava-l] Any memory-optimised blast parser available ?[Scanned] Jolyon Holdstock
• [Biojava-l] Any memory-optimised blast parser available ? Benoit VARVENNE
  • Re: [Biojava-l] Any memory-optimised blast parser available ? Andy Yates
  • Re: [Biojava-l] Any memory-optimised blast parser available ? Benoit VARVENNE
• [Biojava-l] New To BioJava.org Ammad Ud Din
  • Re: [Biojava-l] New To BioJava.org mark . schreiber
• [Biojava-l] reading paptides from a fasta file Gerster Sarah
  • Re: [Biojava-l] reading paptides from a fasta file Felix Dreher
• Re: [Biojava-l] BioSQL -> BioJava Hibernate -> RichSequence access to primary keys mark . schreiber
• [Biojava-l] Parsing blast results Benoit VARVENNE
  • Re: [Biojava-l] Parsing blast results Benoit VARVENNE
• [Biojava-l] BioSQL -> BioJava Hibernate -> RichSequence access to primary keys Seth Johnson
  • Re: [Biojava-l] BioSQL -> BioJava Hibernate -> RichSequence access to primary keys Seth Johnson
• [Biojava-l] Reading sequence identifier from file in FASTA format Alan Acosta
• [Biojava-l] Can BioJava do Multiple Alignments? Michael Tran
  • Re: [Biojava-l] Can BioJava do Multiple Alignments? mark . schreiber
• [Biojava-l] Using Java to create BLAST searches Graham Etherington
  • Re: [Biojava-l] Using Java to create BLAST searches Andy Yates
  • Re: [Biojava-l] Using Java to create BLAST searches Graham Etherington
  • Re: [Biojava-l] Using Java to create BLAST searches mark . schreiber
  • Re: [Biojava-l] Using Java to create BLAST searches Ng, Peter
  • Re: [Biojava-l] Using Java to create BLAST searches Graham Etherington
  • Re: [Biojava-l] Using Java to create BLAST searches Ng, Peter
  • Re: [Biojava-l] Using Java to create BLAST searches Graham Etherington
  • Re: [Biojava-l] Using Java to create BLAST searches CEZARD Timothée
• [Biojava-l] pK values Gerster Sarah
  • Re: [Biojava-l] pK values Mark Schreiber
  • Re: [Biojava-l] pK values David Huen
• [Biojava-l] fasta description line ThorstenInAnger
  • Re: [Biojava-l] fasta description line Mark Schreiber
• [Biojava-l] More extensive Bioperl-run 1.5.2RC2 tests Nathan S. Haigh
  • Re: [Biojava-l] More extensive Bioperl-run 1.5.2RC2 tests Nathan Haigh
• [Biojava-l] can BioJava do alignment ? Carmel Kent
  • Re: [Biojava-l] can BioJava do alignment ? Ramon Medrado
  • Re: [Biojava-l] can BioJava do alignment ? mark . schreiber
• [Biojava-l] NESCent Phyloinformatics Hackathon Hilmar Lapp
• [Biojava-l] Java(TM) Andreas Dräger
  • Re: [Biojava-l] Java(TM) mark . schreiber
• [Biojava-l] advice on ABIFParser Ed Dicks
  • Re: [Biojava-l] advice on ABIFParser Russ Kepler
• [Biojava-l] how can i read a genbank Rajeswari
  • Re: [Biojava-l] how can i read a genbank Mark Schreiber
• [Biojava-l] Calendar NandaKumar Sreedharan
• [Biojava-l] getting protein id Gautam S. Thakur
  • Re: [Biojava-l] getting protein id Mark Schreiber
• Re: [Biojava-l] about reading files[Scanned] Jolyon Holdstock
• [Biojava-l] about reading files Rajeswari
  • [Biojava-l] how to get specific data from biosql database gang wu
  • Re: [Biojava-l] how to get specific data from biosql database David Huen
  • Re: [Biojava-l] how to get specific data from biosql database gang wu
• [Biojava-l] biojava documentation download Simon Moses
  • Re: [Biojava-l] biojava documentation download gang wu
• [Biojava-l] use NCBISequenceDB without gi AC Titi
  • Re: [Biojava-l] use NCBISequenceDB without gi AC CEZARD Timothée
• [Biojava-l] LabelledSequenceRenderer Jolyon Holdstock
• [Biojava-l] I'm inviting you srinandakumar
• [Biojava-l] biojava 1.5 beta release mark . schreiber
• [Biojava-l] EBI axis Dr. Christoph Gille
  • Re: [Biojava-l] EBI axis Stefan Goetz
  • Re: [Biojava-l] EBI axis mark . schreiber
  • Re: [Biojava-l] EBI axis Tom Oinn
• [Biojava-l] Multiple Sequence Alignment with Profile HMMs Chrysa Collyda
  • Re: [Biojava-l] Multiple Sequence Alignment with Profile HMMs mark . schreiber

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