Hello, I'm interested in a Java package for sequence alignment. I understood that BioJava 1.3 & 1.4 itself cannot align sequences, it can only create objects that are representations of alignments generated by third-party software.
I had an impression that BioJava 1.5 can do alignment itself (e.g., I saw in http://biojava.org/wiki/BioJava:CookBook:DP:PairWise2 the class named org.biojava.bio.alignment.NeedlemanWunch) I have two questions: is this true ? I mean, does BioJava 1.5 contain the alignment algorithm, itself ? if it does, I downloaded the CVS view of BioJava 1.5, but could not find any javadocs or the alignment package source. Where can I find it ? Thanks very much, Carmel Kent Research Staff Member Healthcare I/T Research IBM Research Laboratory in Haifa Tel. +972-4-8281059 Email: [EMAIL PROTECTED] _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
