Hi - The values are calculated using the SymbolPropertyTable returned by ProteinTools.getSymbolPropertyTable(SymbolPropertyTable.PK);
This table gets it's values from the resource file org/biojava/bio/symbol/ResidueProperties.xml The pK values were added by david huen (I think). To read XML sequence files try one of the methods in RichSequence.IOTools from biojava 1.5 beta. - Mark On 10/31/06, Gerster Sarah <[EMAIL PROTECTED]> wrote: > Hi! > > I want to compute the pI of some sequences. I looked at > "IsoelectricPointCalc.java". Where do the values for the pks come from? are > they defined as constants somewhere? I couldn't find them... I wanted to see > if the values are the same ones than the ones that I am supposed to use. > > And another question> reading in sequences from an xml file... Is there > something that I can use, or do I have to write it on my own? > > Cheers > > Sarah > > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
