On Nov 24 2006, Benoit VARVENNE wrote: >Hello, > >I'm parsing blast results using biojava1.5 and a BlastXMLParserFacade with >the code put at the end of this mail. > >I've tried this with a blastN query and there i got no trouble. >However, i've tried to do exactly the same thing with a BlastP query and >i've got the exception cited at the end of this mail. > > I've verified and the two infiles (blastn/blastp) seem to have the same > structures (except that one is for prot so data are different). (Please > find them as attached if you're used to this). > >Can someone help me ? I don't understand why it works in a case and not in >the other one ... > I am uncertain whether BlastXMLFacade will actually support a protein sequence parse. It was originally developed to handle blastn. Anyone else tried it with blastp?
I'm offline till Sunday so I can't reply till then. Regards, David Huen _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
