Dear All, I am having a problem using the Blosum62 matrix file from the NCBI website for use in Smith-Waterman alignments. When I attempt to run my code reading in the file to initialise the Substitution Matrix Object the following exception is thrown
"org.biojava.bio.symbol.IllegalSymbolException: This tokenization doesn't contain character: '*'" Thanking you in advance, Saif -------------------------------------------------------------------------------- Saif Ur-Rehman Research Student The Centre for Evolution, Genes & Genomics (CEGG) Sir Harold Mitchell Building School of Biology The University of St Andrews St Andrews, Fife Scotland,UK ------------------------------------------------------------------ University of St Andrews Webmail: https://webmail.st-andrews.ac.uk _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
