Hi -
The name tokenization is provided because biojava can simply look up the
name of the symbol. For a "token" tokenization you would need to provide a
custom mapping for your custom alphabet.
Probably the simplist was is to instantiate a
org.biojava.bio.seq.io.CharacterTokenization and use the bindSymbol method
to bind Symbols to characters. If you want to register the tokenization
with the Alphabet then most Biojava alphabets derive from AbstractAlphabet
which contains the method: putTokenization(String name, SymbolTokenization
tok)
You could then register your tokenization under the name "token". This is
only required if other code is going to use the tokenization as after
creating it you already have a reference to it anyway.
- Mark
zt_2003 <[EMAIL PROTECTED]>
Sent by: [EMAIL PROTECTED]
05/21/2007 10:07 AM
To: [email protected]
cc: (bcc: Mark Schreiber/GP/Novartis)
Subject: [Biojava-l] how to set the "token" parameter?
I had made a custum alphabet und.but when I call the function:
System.out.println("22222222---"+und.getTokenization("token"));give such
error: There is no tokenization 'token' defined in alphabet UND.
und.getTokenization("default")) ot und.getTokenization("name")) is ok. And
I can't find any api to set the tokenization 'token',how to do it?
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