Hi Andrew, > Do I observe correctly that org.biojava.bio.structure.io.PDBFileParser > does not currently handle secondary structure annotation (e.g. HELIX, > SHEET, or TURN records),
The parser is fine, but this has been a missing feature so far. To add support for this I just committed a patch to the biojava CVS. The parser now (optionally) can attach the secondary structure assignment that has been provided by the author of the PDB file to an amino acid. See also http://biojava.org/wiki/BioJava:CookBook:PDB:read Andreas ----------------------------------------------------------------------- Andreas Prlic Wellcome Trust Sanger Institute Hinxton, Cambridge CB10 1SA, UK +44 (0) 1223 49 6891 The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road London NW12BE. _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
