Hi, I try to download Sequences via NCBISequenceDB, but is dos not work. I get an Error: org.biojava.bio.BioException: Could not read sequence I try also with the 1.5 BIO-JAVA but it also not work. I found that the BIO-JAVA start a request with on with this URL: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=text&db=nucleotide&uid=NM_000530&dopt=FASTA the result is a XML, but BIO-JAVA expect a FASTA fil [at org.biojava.bio.seq.io.StreamReader.nextSequence(StreamReader.java:105)]. It looks like that NCBI has changed the API.
Christian -- Christian Köberle Max Planck Institute for Infection Biology Department of Immunology Campus Charité Mitte Charitéplatz 1 10117 Berlin Tel: +49 30 28 460 562 _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
