-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 The getSequence() method interrogates NCBI via the eUtils Java tool (part of Entrez) and downloads Genbank-format files which it then parses into RichSequence objects.
It can only search by primary ID using EFetch (see eUtils documentation here: http://eutils.ncbi.nlm.nih.gov/entrez/query/static/eutils_help.html#PrimaryIDs ), but the GI is returned for all records as part of the result. The GI tag (from the VERSION field) is retrieved by calling getIdentifier() - it is returned without the GI: prefix. cheers, Richard Christian Köberle wrote: > Hi, > > is it possible to get a Sequence from NCBI by a GeneID. Or get the > GeneID with a Accessionnumber? > I can not find the GeneID in a RichSequence-Object that I have from > GenbankRichSequenceDB .getSequence() > > Christian > -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.2.2 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org iD8DBQFGcqVh4C5LeMEKA/QRAsfFAJ47vGtpBJSSQmlgDtJLsUAQl135EQCfdtjK lF3bx2KiPHZoxx7+w+HfEHo= =2MQz -----END PGP SIGNATURE----- _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
