Hi Rafael,
suppose the following PDB file:
...
1) If I use
//struc being the parsed pdb file
returnChain = struc.getChainByPDB("A", 1);
I get chain A EXCEPT everything after the TER (ZN and ADE is excluded
in this example).
This seems wrong. You should get the full chain here. TERs are getting
ignored. Let me check what might cause this. You are on the latest
version from svn?
2) If I iterate over the complete file using something like
//struc being the parsed pdb file
int nrModels = struc.nrModels();
for (int modelNr = 0; modelNr < nrModels; modelNr++) {
List<Chain> chains = struc.getModel(modelNr);
int nrChains = chains.size();
for (int chainNr = 0; chainNr < nrChains; chainNr++) {
//this chain contains also the ZN and the ADE
That's what I would expect...
Andreas
So maybe I am getting something wrong here. Is this effect wanted by
the PDB parser?
Thanks!
Raphael
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