On Tue, Feb 3, 2009 at 4:30 PM, Andreas Prlic <[email protected]> wrote: ... >> 1) If I use >> >> //struc being the parsed pdb file >> returnChain = struc.getChainByPDB("A", 1); >> >> I get chain A EXCEPT everything after the TER (ZN and ADE is excluded >> in this example). > > This seems wrong. You should get the full chain here. TERs are getting > ignored. Let me check what might cause this. You are on the latest version > from svn? Thanks for the quick response. And sorry for having bothered you - after writing a quick unit test it became pretty clear that it is my own fault. I thought I double checked that yesterday (and I should write the unit test before writing to the list - I know). The "supposed-to-be-bug-but-was-my-own-failure" came from setParseCAOnly().
Sorry and thanks again! Raphael _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
