Cheers.
I still haven't implemented the editor.I assume for basecall editing, I
can use 'Edit' class.
Like:
ABIFChromatogram a;
..
..
a.getBaseCalls().edit(new Edit(.......))
And for Quality values, I am hoping to read and store Qualitly files
generated by 'phred'.And when user edit the basecall, I am planing to
edit stored quality values accordinly.
Finally the fasta file is generated using ABIFChromatogram.getBaseCalls()...
and Quality file will be generated using the structure I used above.
Any issues with this approach?
Many thanks,
Umanga
Russ Kepler wrote:
On Thursday 19 February 2009 22:48:45 Ashika Umanga Umagiliya wrote:
My problem is can I use the same Quality files ,with the modified
callbases ?
Edit the quality data in parallel with the chromatogram. I would assume that
the editor is relatively sure of their edits, so I would give them a high
confidence level when I generate the trace fasta and quality file.
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