Dear Anant Jain,
i am aligning two protein sequences using BLOSUM62 substitution matrix but an runtime error is coming which is " this tokenization does not contain character ' * ' " some IllegalSymbolExceptionplease suggest me solution or any substitution matrix or do i have to change my sequence format.
This problem occurs very frequently because in BioJava the * symbol (the termination symbol) belongs to the alphabet PROTEIN_TERM and not to the alphabet PROTEIN. Please use the correct alphabet and you'll be fine.
Cheers Andreas _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
