Hi Michal, you can get the backbone atoms e.g. by using the StructureTools class:
StructureTools.getBackboneAtomArray(Structure s) http://www.biojava.org/docs/api/org/biojava/bio/structure/StructureTools.html Andreas On Fri, Feb 27, 2009 at 12:05 AM, Michal Lorenc <[email protected]> wrote: > Hi Andreas, > Thank you for your email. But how can I find backbone amino acids? > > Thank you in advance. > > Best regards, > > Michal > > Andreas Prlic wrote: >> >> Hi Michal, >> >> You could use the Calc class to calculate all the distances of Atoms >> that are in proximity of a the ligand. >> >> Andreas >> >> >> On Wed, Feb 25, 2009 at 10:30 PM, Michal Lorenc <[email protected]> wrote: >>> >>> Dear Andreas, >>> do you know how it is possible to find backbone amino acids around the >>> ligand with BioJava or do you know another software? >>> >>> Thank you in advance. >>> >>> Best regards, >>> >>> Michal >>> >> >> > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
