Hi Jose, Thanks for spotting this. I disabled the get/setPDBline a while ago since it essentially doubles memory usage. It would be better to have an Atom.toPDB or a FileConvert.toPDB(Atom) class that builds up the String output dynamically.. I will flag the method calls as deprecated.
Andreas 2010/12/30 José Augusto Salim <[email protected]>: > Hi Andreas, > > I have used BioJava3 and I find some kind of bug on it. When I try to use > the function getPBDline from Atom interface it return a blank string, it > because in PDBFileParser when a new AtomImpl is created no pdbLine is set. > So, I change the code for it works, just but the line: > > atom.setPDBline(line.trim()); > > in PDBFileParser.java > > I'm sending the file for you. > > thanks for BioJava3 it has been very useful for my work. > > best regardless, > > === > José Augusto Salim > Computer Engineer > ------------------------------- > http://www.thezeitgeistmovement.com > http://www.zeitgeistmovie.com > > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
