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• • Re: [Biojava-l] programming error Andreas Prlic
• [Biojava-l] Problem with MultipleSequenceAlignment udana chathuranga
  • Re: [Biojava-l] Problem with MultipleSequenceAlignment Scooter Willis
  • Re: [Biojava-l] Problem with MultipleSequenceAlignment udana chathuranga
• [Biojava-l] GFF3 Reader Craig Berry
  • Re: [Biojava-l] GFF3 Reader Scooter Willis
• [Biojava-l] average structure Jay Vyas
  • Re: [Biojava-l] average structure Andreas Prlic
• [Biojava-l] Project Ideas GSOC 2011 udana chathuranga
  • Re: [Biojava-l] Project Ideas GSOC 2011 Andreas Prlic
  • Re: [Biojava-l] Project Ideas GSOC 2011 udana chathuranga
  • Re: [Biojava-l] Project Ideas GSOC 2011 Andreas Prlic
  • Re: [Biojava-l] Project Ideas GSOC 2011 udana chathuranga
• [Biojava-l] average or minimal energy structure for nmr structures... Jay Vyas
  • Re: [Biojava-l] average or minimal energy structure for nmr structures... Andreas Prlic
• [Biojava-l] NESCent Seeks Hackathon Whitepapers Hilmar Lapp
• [Biojava-l] It is possible to parse phylogenetic trees with bootstrap/posterior probabilities Martin Jones
• [Biojava-l] Attempt at Cookbook David Scott
  • Re: [Biojava-l] Attempt at Cookbook Andreas Prlic
• [Biojava-l] The root node is missing when parsing nexus tree files from MrBayes Martin Jones
  • Re: [Biojava-l] The root node is missing when parsing nexus tree files from MrBayes Tiago Antão
  • Re: [Biojava-l] The root node is missing when parsing nexus tree files from MrBayes Andreas Prlic
  • Re: [Biojava-l] The root node is missing when parsing nexus tree files from MrBayes Tiago Antão
  • Re: [Biojava-l] The root node is missing when parsing nexus tree files from MrBayes Martin Jones
• [Biojava-l] From biojava to biojava3 Khalil El Mazouari
  • Re: [Biojava-l] From biojava to biojava3 Scooter Willis
• [Biojava-l] advice on rmsd algorithms.... Jay Vyas
  • Re: [Biojava-l] advice on rmsd algorithms.... Andreas Prlic
  • Re: [Biojava-l] advice on rmsd algorithms.... Jay Vyas
  • Re: [Biojava-l] advice on rmsd algorithms.... Andreas Prlic
• [Biojava-l] Write seq in Genbank format Khalil El Mazouari
  • Re: [Biojava-l] Write seq in Genbank format Richard Holland
• [Biojava-l] structure alignment seems slow ... Jay Vyas
  • Re: [Biojava-l] structure alignment seems slow ... Andreas Prlic
  • Re: [Biojava-l] structure alignment seems slow ... Jay Vyas
  • Re: [Biojava-l] structure alignment seems slow ... Andreas Prlic
• [Biojava-l] ScalaLab, a system that can offers high-level scripting access to BioJava sterg
• [Biojava-l] SimpleGapPenalty defaults Khalil El Mazouari
  • Re: [Biojava-l] SimpleGapPenalty defaults Andreas Prlic
  • Re: [Biojava-l] SimpleGapPenalty defaults Khalil El Mazouari
  • Re: [Biojava-l] SimpleGapPenalty defaults Andreas Prlic
  • Re: [Biojava-l] SimpleGapPenalty defaults Khalil El Mazouari
• [Biojava-l] Registrations open for DAS Workshop 2011 Jonathan Warren
• [Biojava-l] Purpose of BioJava mailing list McSweeny, Andrew J
  • Re: [Biojava-l] Purpose of BioJava mailing list Mark Schreiber
• [Biojava-l] unwanted gap in alignments Khalil El Mazouari
  • Re: [Biojava-l] unwanted gap in alignments Scooter Willis
  • Re: [Biojava-l] unwanted gap in alignments Khalil El Mazouari
  • Re: [Biojava-l] unwanted gap in alignments Andreas Prlic
  • Re: [Biojava-l] unwanted gap in alignments Andrew Walsh
  • Re: [Biojava-l] unwanted gap in alignments Khalil El Mazouari
• Re: [Biojava-l] Biojava-l Digest, Vol 96, Issue 5 Matthew Busse
• Re: [Biojava-l] github svn access issues ... resolved Andreas Prlic
• [Biojava-l] github svn access issues Andreas Prlic
• [Biojava-l] Checking out code Matthew Busse
  • Re: [Biojava-l] Checking out code Andreas Prlic
  • Re: [Biojava-l] Checking out code Andreas Prlic
• [Biojava-l] biojava3 getting the features from alignedsequence Hara Dilley
  • Re: [Biojava-l] biojava3 getting the features from alignedsequence Scooter Willis
  • Re: [Biojava-l] biojava3 getting the features from alignedsequence Hara Dilley
  • Re: [Biojava-l] biojava3 getting the features from alignedsequence Scooter Willis
  • Re: [Biojava-l] biojava3 getting the features from alignedsequence Marco Valtas
  • Re: [Biojava-l] biojava3 getting the features from alignedsequence Hara Dilley
  • Re: [Biojava-l] biojava3 getting the features from alignedsequence Scooter Willis
  • Re: [Biojava-l] biojava3 getting the features from alignedsequence Hara Dilley
  • Re: [Biojava-l] biojava3 getting the features from alignedsequence Scooter Willis
• Re: [Biojava-l] how to access biojava source control on svn Andreas Prlic
  • Re: [Biojava-l] how to access biojava source control on svn Marco Valtas
  • Re: [Biojava-l] how to access biojava source control on svn Andreas Prlic
  • Re: [Biojava-l] how to access biojava source control on svn Steve Darnell
• [Biojava-l] Error parsing GFF3 file Philipp Comans
  • Re: [Biojava-l] Error parsing GFF3 file Scooter Willis
  • Re: [Biojava-l] Error parsing GFF3 file Josh Goodman
• Re: [Biojava-l] BioJava3 - Structure - Bug Andreas Prlic
• [Biojava-l] QBlast in BioJava3 Matthew Busse
  • Re: [Biojava-l] QBlast in BioJava3 Sylvain Foisy Ph. D.
  • Re: [Biojava-l] QBlast in BioJava3 Andreas Prlic
  • Re: [Biojava-l] QBlast in BioJava3 Matthew Busse
  • Re: [Biojava-l] QBlast in BioJava3 Matthew Busse
  • Re: [Biojava-l] QBlast in BioJava3 Sylvain Foisy Ph. D.
• [Biojava-l] BioJava 3.0 released Andreas Prlic
• [Biojava-l] biojava3.0-beta4 Andreas Prlic
• [Biojava-l] Thread safety of the AtomCache Daniel Asarnow
  • Re: [Biojava-l] Thread safety of the AtomCache Andreas Prlic
• [Biojava-l] how to cancel download chemcomp when parser a PDB file Fico
  • [Biojava-l] Is there cvtree algorithm in biojava? marcelo rodriguez
  • Re: [Biojava-l] how to cancel download chemcomp when parser a PDB file Steve Darnell
  • Re: [Biojava-l] how to cancel download chemcomp when parser a PDB file Andreas Prlic
  • Re: [Biojava-l] how to cancel download chemcomp when parser a PDB file Daniel Asarnow
  • Re: [Biojava-l] how to cancel download chemcomp when parser a PDB file Andreas Prlic
  • Re: [Biojava-l] how to cancel download chemcomp when parser a PDB file Fico
  • Re: [Biojava-l] how to cancel download chemcomp when parser a PDB file Andreas Prlic
• [Biojava-l] predicting atoms from backbone Jay Vyas
  • Re: [Biojava-l] predicting atoms from backbone Andreas Prlic
• [Biojava-l] SequenceMixin Error in BioJava3 Alignment Chris Friedline
  • Re: [Biojava-l] SequenceMixin Error in BioJava3 Alignment Andy Yates
  • Re: [Biojava-l] SequenceMixin Error in BioJava3 Alignment Andy Yates
  • Re: [Biojava-l] SequenceMixin Error in BioJava3 Alignment Andreas Prlic
  • Re: [Biojava-l] SequenceMixin Error in BioJava3 Alignment Chris Friedline
  • Re: [Biojava-l] SequenceMixin Error in BioJava3 Alignment Chris Friedline
  • Re: [Biojava-l] SequenceMixin Error in BioJava3 Alignment Andy Yates
  • Re: [Biojava-l] SequenceMixin Error in BioJava3 Alignment Scooter Willis
  • Re: [Biojava-l] SequenceMixin Error in BioJava3 Alignment Andy Yates
• [Biojava-l] newbie question about gff Rusch, Michael
• [Biojava-l] PDBFileParser question using PDBID 470D Steve Darnell
  • Re: [Biojava-l] PDBFileParser question using PDBID 470D Andreas Prlic
  • Re: [Biojava-l] PDBFileParser question using PDBID 470D Steve Darnell
  • Re: [Biojava-l] PDBFileParser question using PDBID 470D Andreas Prlic
• [Biojava-l] biojava iupac atom names for pdb files Jay Vyas
  • Re: [Biojava-l] biojava iupac atom names for pdb files Andreas Prlic
• [Biojava-l] new biojava related paper Andreas Prlic
• [Biojava-l] AtomCache: auto-fetch and chemcompinfo Daniel Asarnow
  • Re: [Biojava-l] AtomCache: auto-fetch and chemcompinfo Andreas Prlic
• [Biojava-l] Fyi: Client side high performance computing project using Biojava Raphael André Bauer
• [Biojava-l] merging structures Jay Vyas
  • Re: [Biojava-l] merging structures Andreas Prlic
  • Re: [Biojava-l] merging structures Jay Vyas
• [Biojava-l] biojava 3 jmol Jay Vyas
  • Re: [Biojava-l] biojava 3 jmol Andreas Prlic
• [Biojava-l] reading Nexus files filip
  • Re: [Biojava-l] reading Nexus files Andy Yates
  • Re: [Biojava-l] reading Nexus files Tiago Antão
  • Re: [Biojava-l] reading Nexus files filip
  • Re: [Biojava-l] reading Nexus files Tiago Antão
  • Re: [Biojava-l] reading Nexus files Scooter Willis
• [Biojava-l] Superimposing structure pieces Daniel Asarnow
  • Re: [Biojava-l] Superimposing structure pieces Andreas Prlic
  • Re: [Biojava-l] Superimposing structure pieces Daniel Asarnow
• Re: [Biojava-l] JavaDocs and Backwards compatibility Jay Vyas
• Re: [Biojava-l] Biojava-l Digest, Vol 93, Issue 21 Jay Vyas
  • Re: [Biojava-l] Biojava-l Digest, Vol 93, Issue 21 Scooter Willis
  • Re: [Biojava-l] Biojava-l Digest, Vol 93, Issue 21 Mark Schreiber
  • Re: [Biojava-l] Biojava-l Digest, Vol 93, Issue 21 Andreas Prlic
• [Biojava-l] New Biojava Logo jitendra narayan
  • Re: [Biojava-l] New Biojava Logo Alessandro Cipriani
  • Re: [Biojava-l] New Biojava Logo simon rayner
  • Re: [Biojava-l] New Biojava Logo Mark Fortner
  • Re: [Biojava-l] New Biojava Logo Scooter Willis
• [Biojava-l] biojava maven integration Jay Vyas
  • Re: [Biojava-l] biojava maven integration Jay Vyas
  • Re: [Biojava-l] biojava maven integration Andreas Prlic
• [Biojava-l] K-mers Vishal Thapar
  • Re: [Biojava-l] K-mers Andy Yates
  • Re: [Biojava-l] K-mers jitesh dundas
  • Re: [Biojava-l] K-mers Andy Yates
  • Re: [Biojava-l] K-mers jitesh dundas
  • Re: [Biojava-l] K-mers jitesh dundas
  • Re: [Biojava-l] K-mers Andy Yates
  • Re: [Biojava-l] K-mers Vishal Thapar
  • Re: [Biojava-l] K-mers Mark Fortner
  • Re: [Biojava-l] K-mers Andy Yates
  • Re: [Biojava-l] K-mers jitesh dundas
  • Re: [Biojava-l] K-mers Andy Yates
  • Re: [Biojava-l] K-mers jitesh dundas
  • Re: [Biojava-l] K-mers Andy Yates
  • Re: [Biojava-l] K-mers jitesh dundas
  • Re: [Biojava-l] K-mers Andreas Prlic
  • Re: [Biojava-l] K-mers Mark Fortner
  • Re: [Biojava-l] K-mers Andy Yates
• [Biojava-l] Tr: Retrieve Information from GenBank file jc.lucky
  • Re: [Biojava-l] Tr: Retrieve Information from GenBank file Scooter Willis
  • Re: [Biojava-l] Tr: Retrieve Information from GenBank file jc.lucky
  • Re: [Biojava-l] Tr: Retrieve Information from GenBank file Richard Holland
  • Re: [Biojava-l] Tr: Retrieve Information from GenBank file jc.lucky
• [Biojava-l] Bad PDB files and batch processing with PDBFileReader Daniel Asarnow
  • Re: [Biojava-l] Bad PDB files and batch processing with PDBFileReader Andreas Prlic
  • Re: [Biojava-l] Bad PDB files and batch processing with PDBFileReader Daniel Asarnow
  • Re: [Biojava-l] Bad PDB files and batch processing with PDBFileReader Andreas Prlic
  • Re: [Biojava-l] Bad PDB files and batch processing with PDBFileReader Daniel Asarnow
  • Re: [Biojava-l] Bad PDB files and batch processing with PDBFileReader Andreas Prlic
  • [Biojava-l] Bad PDB files and batch processing with PDBFileReader Daniel Asarnow
  • Re: [Biojava-l] Bad PDB files and batch processing with PDBFileReader Andreas Prlic
  • Re: [Biojava-l] Bad PDB files and batch processing with PDBFileReader Daniel Asarnow
  • Re: [Biojava-l] Bad PDB files and batch processing with PDBFileReader Daniel Asarnow
  • Re: [Biojava-l] Bad PDB files and batch processing with PDBFileReader Andreas Prlic
  • Re: [Biojava-l] Bad PDB files and batch processing with PDBFileReader Daniel Asarnow
  • Re: [Biojava-l] Bad PDB files and batch processing with PDBFileReader Andreas Prlic
• [Biojava-l] Global alignment problem (bug?) in NeedlemanWunsch Chris Friedline
  • Re: [Biojava-l] Global alignment problem (bug?) in NeedlemanWunsch Andreas Draeger
  • Re: [Biojava-l] Global alignment problem (bug?) in NeedlemanWunsch Chris Friedline
  • Re: [Biojava-l] Global alignment problem (bug?) in NeedlemanWunsch Andreas Prlic
  • Re: [Biojava-l] Global alignment problem (bug?) in NeedlemanWunsch Chris Friedline
  • Re: [Biojava-l] Global alignment problem (bug?) in NeedlemanWunsch Chris Friedline
  • Re: [Biojava-l] Global alignment problem (bug?) in NeedlemanWunsch Andreas Dräger
• [Biojava-l] Test Message Chris Friedline
• [Biojava-l] 3.0-alpha2 Andreas Prlic
• [Biojava-l] Retrieve Information from GenBank file jc.lucky
• Re: [Biojava-l] Biojava-l Digest, Vol 93, Issue 9 sobia idrees
  • Re: [Biojava-l] Biojava-l Digest, Vol 93, Issue 9 sobia idrees
  • Re: [Biojava-l] Biojava-l Digest, Vol 93, Issue 9 Richard Holland
• [Biojava-l] feature request - full query description from blast result Hedwig Kurka
• Re: [Biojava-l] Questions related to biojava Andreas Prlic
• [Biojava-l] BioJava translation Pjotr Prins
  • Re: [Biojava-l] BioJava translation Richard Holland
  • Re: [Biojava-l] BioJava translation Pjotr Prins
  • Re: [Biojava-l] BioJava translation Richard Holland
  • Re: [Biojava-l] BioJava translation Pjotr Prins
  • Re: [Biojava-l] BioJava translation Andy Yates
  • Re: [Biojava-l] BioJava translation Andreas Prlic
  • Re: [Biojava-l] BioJava translation Andy Yates

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