Hara Can you provide more of the code you are using that shows how you are loading the initial sequences.
Thanks Scooter On Thu, Jan 6, 2011 at 7:09 PM, Hara Dilley <[email protected]> wrote: > Hi, > > I would like to align a set of sequences against a scaffold and get the > list of the modifications for each aligned sequence. > I am using biojava3 > I have tried to create a profile thinking that I can get the > AlignedSequences from it but that it appears to be null. > Here is part of my code: > > Profile<ProteinSequence, AminoAcidCompound> profile = > Alignments.getMultipleSequenceAlignment(lst); > Profile.getAlignedSequence(0); > > Can someone please point to an example for this or to the classes I have to > use. > Thank you, > Hara > > > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
