glad to hear that it works now. I agree with your initial assumption about the StructureTool class. The getAtomCAArray should only consider model 0. I will change it to behave accordingly...
Andreas On Wed, Jan 19, 2011 at 3:12 PM, Jay Vyas <[email protected]> wrote: > Fixed my problem, the issue was that i had multiple models in my structures, > and I assumed biojava was only using the first one. > > To fix it , if you replace > > > Atom[] ca2 = StructureTools.getAtomCAArray(s2); > > with > > Atom[] ca2 = StructureTools.getAtomCAArray(s2.getModel(0).get(0)); > > The CE alignmenbt is blazing fast. ~0 seconds > > -- > Jay Vyas > MMSB/UCHC > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
