Hi, Dear all,
I am working on the development of MSA application using BioJava. I want to
make clear a thing. It is that when two or more protein sequences are aligned
the '-' is shown more times in an aligned sequence than the gaps display by the
method of alSeq.getNumGaps(). 'alSeq' is an aligned sequence. For example, if
there are actual 50 '-' in an aligned sequence but the method shows it only 30.
What is the difference between these two results.
Best Regards
Tariq, Phd Scholar
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