I think that AtomCache is the wrong tool for this job. If you have private
PDB files you should just use a PDBFileReader to get each one (see
http://biojava.org/wiki/BioJava:CookBook:PDB:read3.0#Getting_more_control).
I don't think AtomCache should be modified to support this.

-Spencer

On Fri, Sep 16, 2011 at 07:43, Andreas Prlic <[email protected]> wrote:

> If you
> think it is useful we can add something like a pre-fix which would
> tell the cache to load local files with a nonstandard name. Something
> like : private:a1 could be the name to describe your own file.
>
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