Hello Andreas, I noticed this in the pom for das 1.8.2-SNAPSHOT
<dependency> <groupId>org.biojava</groupId> <artifactId>biojava3-structure</artifactId> <version>3.0-alpha1</version> <scope>compile</scope> </dependency> I don't think that would cause trouble as reported below, but it is odd in any case. 1.8.x shouldn't have a dependency on 3.x. Hello Nick, What kind of maven failure are you seeing? michael On Mon, Mar 12, 2012 at 12:54 PM, Andreas Prlic <[email protected]> wrote: > I am not aware of any issues with that. Does either 1.8 or > 1.8.2-SNAPSHOT work? Depending on your IDE, you just might have to > refresh your Maven dependencies? > > Andreas > > > > On Mon, Mar 12, 2012 at 10:39 AM, Nick England <[email protected]> wrote: >> Thanks for the help, 1.8.1 seems to have the classes I need. But I >> haven't been able to get maven to work with biojava 1.8. It works fine >> with 3.X, but when I try to use the dependency: >> <dependency> >> <groupId>org.biojava</groupId> >> <artifactId>biojava-legacy</artifactId> >> <version>1.8.1</version> >> </dependency> >> it fails, even though there appears to be the corresponding pom on the >> repository at >> http://www.biojava.org/download/maven/org/biojava/biojava-legacy/1.8.1/ >> >> I have the repo at : >> <repository> >> <id>biojava-maven-repo</id> >> <name>BioJava repository</name> >> <url>http://www.biojava.org/download/maven/</url> >> </repository> >> >> Am I doing something wrong, or has the release version 1.8.1 somehow >> broken on the repository? >> >> Thanks, >> >> Nick >> >> On 12 March 2012 16:43, Andreas Prlic <[email protected]> wrote: >>> Hi Nick, >>> >>> this feature has not been ported to biojava3 so far and you can get it >>> via biojava 1.8.1 >>> >>> Andreas >>> >>> On Mon, Mar 12, 2012 at 8:04 AM, Nick England <[email protected]> wrote: >>>> Hello all, >>>> >>>> I am trying to read some .scf files into BioJava3. I have found the >>>> example code for 1.3 >>>> (http://biojava.org/wiki/BioJava:Cookbook:SeqIO:ABItoSequence) but I >>>> can't find any classes in the 3.0 API which look at all related to >>>> those ones. Is it possible, or should I downgrade to 1.3 if I want to >>>> be able to read .scf files? >>>> >>>> Thanks, >>>> >>>> Nick >>>> _______________________________________________ >>>> Biojava-l mailing list - [email protected] >>>> http://lists.open-bio.org/mailman/listinfo/biojava-l > > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
