> I don't think that would cause trouble as reported below, but it is > odd in any case. 1.8.x shouldn't have a dependency on 3.x.
In principle I agree, however there are historic reasons for this. If this config causes a problem then I would vote for removing it. The biojava-legacy project contains no structure sources any more since it was completely upgraded into the 3.X series. The API is compatible to a large extent. There is no reason for anybody to still be using a 1.X version of structure. Andreas > Hello Nick, > > What kind of maven failure are you seeing? > > michael > > > On Mon, Mar 12, 2012 at 12:54 PM, Andreas Prlic <[email protected]> wrote: >> I am not aware of any issues with that. Does either 1.8 or >> 1.8.2-SNAPSHOT work? Depending on your IDE, you just might have to >> refresh your Maven dependencies? >> >> Andreas >> >> >> >> On Mon, Mar 12, 2012 at 10:39 AM, Nick England <[email protected]> wrote: >>> Thanks for the help, 1.8.1 seems to have the classes I need. But I >>> haven't been able to get maven to work with biojava 1.8. It works fine >>> with 3.X, but when I try to use the dependency: >>> <dependency> >>> <groupId>org.biojava</groupId> >>> <artifactId>biojava-legacy</artifactId> >>> <version>1.8.1</version> >>> </dependency> >>> it fails, even though there appears to be the corresponding pom on the >>> repository at >>> http://www.biojava.org/download/maven/org/biojava/biojava-legacy/1.8.1/ >>> >>> I have the repo at : >>> <repository> >>> <id>biojava-maven-repo</id> >>> <name>BioJava repository</name> >>> <url>http://www.biojava.org/download/maven/</url> >>> </repository> >>> >>> Am I doing something wrong, or has the release version 1.8.1 somehow >>> broken on the repository? >>> >>> Thanks, >>> >>> Nick >>> >>> On 12 March 2012 16:43, Andreas Prlic <[email protected]> wrote: >>>> Hi Nick, >>>> >>>> this feature has not been ported to biojava3 so far and you can get it >>>> via biojava 1.8.1 >>>> >>>> Andreas >>>> >>>> On Mon, Mar 12, 2012 at 8:04 AM, Nick England <[email protected]> >>>> wrote: >>>>> Hello all, >>>>> >>>>> I am trying to read some .scf files into BioJava3. I have found the >>>>> example code for 1.3 >>>>> (http://biojava.org/wiki/BioJava:Cookbook:SeqIO:ABItoSequence) but I >>>>> can't find any classes in the 3.0 API which look at all related to >>>>> those ones. Is it possible, or should I downgrade to 1.3 if I want to >>>>> be able to read .scf files? >>>>> >>>>> Thanks, >>>>> >>>>> Nick >>>>> _______________________________________________ >>>>> Biojava-l mailing list - [email protected] >>>>> http://lists.open-bio.org/mailman/listinfo/biojava-l >> >> _______________________________________________ >> Biojava-l mailing list - [email protected] >> http://lists.open-bio.org/mailman/listinfo/biojava-l _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
