Hi Dragos, many years of research have been put into both Blast and Hmmer and it will be highly unlikely that you will be able to come up with something better in a summer. As such best to focus on getting a plain port. If you get ideas how to make the algorithms perform better during that time, probably best to feed back that information to the original developers.
> Secondly, converting C/C++ source code into Java would be a very interesting > and challenging task for me. At least for the C++ part I am thinkig to > approach the use oh JNI, but is it possible to occur problems with > portability, building, or JVM's stability? I have also read about NestedVM > which provides binary translation for Java Bycode, and this approach could > be useful. Scooter, do you want to answer this one? Thanks, Andreas _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
