Hi Dragos,

> So basically I have to understand how the programs are working while
> overviewing the sources, so that I could explain in my aplication how I plan
> to port to Java?

I would say so. What are possible problem areas, where could things go
wrong, and what would you do in that case?

Andreas


>
> And Arn, could you explain me a little bit more the cases where the PTM
> would be required or give me some usefull links, beside the wikipage, for
> study?
>
> Thanks you,
> Dragos.



-- 
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Dr. Andreas Prlic
Senior Scientist, RCSB PDB Protein Data Bank
University of California, San Diego
(+1) 858.246.0526
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