Is ATK showing in /usr/lib/pkgconfig?
I would delve and try to isolate how configure checks for atk and then
check that out yourself in a root console.

Yes, it does exist according to pkgconfig. And I did try to have a look in the config script and that's why I only quoted a small part of it that I believe is the source of the message. Below is 'full section', maybe you'll find it useful:

[code]

########################################
# Check for Accessibility Toolkit flags
########################################

ATK_PACKAGES=atk
echo "$as_me:$LINENO: checking ATK flags" >&5
echo $ECHO_N "checking ATK flags... $ECHO_C" >&6
if $PKG_CONFIG --exists $ATK_PACKAGES ; then
        ATK_CFLAGS=`$PKG_CONFIG --cflags $ATK_PACKAGES`
        ATK_LIBS=`$PKG_CONFIG --libs $ATK_PACKAGES`

        echo "$as_me:$LINENO: result: $ATK_CFLAGS $ATK_LIBS" >&5
echo "${ECHO_T}$ATK_CFLAGS $ATK_LIBS" >&6
else
        { { echo "$as_me:$LINENO: error:
        *** Accessibility Toolkit not found. Accessibility Toolkit
        *** is required to build GTK+." >&5
echo "$as_me: error:
        *** Accessibility Toolkit not found. Accessibility Toolkit
        *** is required to build GTK+." >&2;}
   { (exit 1); exit 1; }; }
fi

if $PKG_CONFIG --uninstalled $ATK_PACKAGES; then
        :
else
        gtk_save_LIBS="$LIBS"
        LIBS="$ATK_LIBS $LIBS"
        cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h.  */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h.  */

/* Override any gcc2 internal prototype to avoid an error.  */
#ifdef __cplusplus
extern "C"
#endif
/* We use char because int might match the return type of a gcc2
   builtin and then its argument prototype would still apply.  */
char atk_object_get_type ();
int
main ()
{
atk_object_get_type ();
  ;
  return 0;
}
_ACEOF
rm -f conftest.$ac_objext conftest$ac_exeext
if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
  (eval $ac_link) 2>conftest.er1
  ac_status=$?
  grep -v '^ *+' conftest.er1 >conftest.err
  rm -f conftest.er1
  cat conftest.err >&5
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); } &&
         { ac_try='test -z "$ac_c_werror_flag"
                         || test ! -s conftest.err'
  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
  (eval $ac_try) 2>&5
  ac_status=$?
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); }; } &&
         { ac_try='test -s conftest$ac_exeext'
  { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
  (eval $ac_try) 2>&5
  ac_status=$?
  echo "$as_me:$LINENO: \$? = $ac_status" >&5
  (exit $ac_status); }; }; then
  :
else
  echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5

{ { echo "$as_me:$LINENO: error:
        *** Cannot link to Accessibility Toolkit. Accessibility
        *** Toolkit is required to build GTK+" >&5
echo "$as_me: error:
        *** Cannot link to Accessibility Toolkit. Accessibility
        *** Toolkit is required to build GTK+" >&2;}
   { (exit 1); exit 1; }; }
fi


[/code]

Best regards,
David Ciecierski
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